NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1001753

Scaffold Ga0213867_1001753


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1001753 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9670
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047989Metagenome / Metatranscriptome149Y
F065691Metagenome127Y
F068719Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100175311F065691GAGGLNIYIPEPITILLVVLSFLAGFLYRQYNDKEEIADAYDEGFEKGAKSVVSAVAQITGKDIEIDFDRDR
Ga0213867_100175319F047989GAGGMTKEYEKLFAAISGHFLTQQLPDNWGDFDDEYLEEWFVECAVHTYEYWDWAQVYAKIAAITETAMELMKGTKS
Ga0213867_100175320F068719AGGAGGMRDHLHIPATLTELAAEIADTVLENMYYANVTAPQTLYTHDKETDCSMYTDEAQDRFNTLHDMIEQTIGSYLLNEELK
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