NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1003460

Scaffold Ga0213867_1003460


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1003460 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6858
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030742Metagenome / Metatranscriptome184N
F064618Metagenome128N
F072290Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100346010F030742GAGGMKNLLIAVSVMVAGVATAQEAPTPVGNTYVELGTTFEDQTTLSVGTGVGSGALSAYGELSGSTDGNFQVRAYTDVEFGKFVITPGINYGWGEDGGDLVGFGDNNEWGDVTGDLEVALQPGIIGGEYVFSNTGVGADGWSLEWDGGEVGAGYKLDLAENVYLDGRVSWGYDDQFESTDRRITAGFGLKF
Ga0213867_100346011F072290AGGMKAYNLKKFKKLVEDADMVYGTVSLNAAVRVPVRVRKKTLLKYLSEITPGTWADELVIYAETGTTPKGHKTLKLV
Ga0213867_10034609F064618GGAGMITTRILAALFVVLFTLTACTGLSLATKGATLLAESTGNAQIEQATEILTEVAGDAVPLAGIVNITNTNWVMLGLLILGWILPSPGEILRTIFNPIGWLIKTLLIKK
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