NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1004827

Scaffold Ga0213867_1004827


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1004827 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5836
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005178Metagenome / Metatranscriptome409Y
F008731Metagenome / Metatranscriptome329Y
F010471Metagenome303Y
F067210Metagenome126N
F079326Metagenome116N
F084110Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100482710F079326AGGAMTRYYIATVSSDGRHANQRWLSNVDDLTDVMVQYVNEGHKVTIEEEIYNGL
Ga0213867_100482711F008731AGGAGMFVIFATKPLNDGTKGFRFNFLGYKGLTRKRKHTSRGYKINVGGCMKAIHLGKRTVYLEHNSTPNKLRHFAG
Ga0213867_10048273F084110GAGLITVPTGTTKILMMQKSNVRQEAQAQAEKAYDLFILWSKRTVYAIIATLLLLASCDFGTDTKTGSQYNGAVYAPRNIGG
Ga0213867_10048275F005178AGGAMVYILIWMQLFSGQSVEHYQLGTYATLEECQIEMSTAAKMVTHKAETVACLEVEVQR
Ga0213867_10048276F010471AGGAGMMQLTLTINTNAYPEYDKHQLNEMLGLLPLWVAEHVGNDDGTDLVQFMTDRYGFGKLYKFDGGIDKDGYYISSHEDDADMPYIGKMITKDGYAYFYDYAIIALPQADGTHFITRMD
Ga0213867_10048279F067210AGGAGMAYKNEISAYNANYGGLRGAKILEFYMEQCDFDPDHFWPTFRMQKGKDIFKFILSQDPEGNGSGFAFIEDV
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