NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1011824

Scaffold Ga0213867_1011824


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1011824 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3677
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011269Metagenome293Y
F011396Metagenome / Metatranscriptome291Y
F103173Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_101182410F103173GGAGMKAEKRQEMRVSKAIAQAWEGSTSAKQAAEKYVVMLKEDQALRDEATENWLERIAYKDVAMHPVNYRHAFKSSVQKLKVLQKGETSTPSVALTGVVSIYAQDMFERFRLPNTGVPLGDATREDLENAIAHEGSRSTHHAQQKVFYEKMQKRLSGNAQVVREVWTTEEAERAYQEALA
Ga0213867_10118242F011396GGAGMNDIPDYFAIAAKIIERAERGLPQDRWMRGDHEMEALVRAYIALLNTCSNMHADMIQRGSDAMDIS
Ga0213867_10118244F011269GGAGMEFFTAFYIEYAVRGMDIQSYILLPSYEACQIMIRDNEDMEKYMFADGDVNMWCIKTDKLSQSVRPILRPE
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