NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1016150

Scaffold Ga0213867_1016150


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1016150 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3097
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y
F056585Metagenome137N
F056586Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10161502F023856GGAGGMRCRACDRILEESELTKKDAHGDFLDLCNICLSATARSGVDTETMEYYQYEIFTEDENYDTLY
Ga0213867_10161503F024320AGGGGGMTFEEYEQGYYSGDSEDNSGPPEDPETHAMVEHLVEFDTEMYRLDSRRKYKGLSYRHLESLMIDLHGEEWRDAL
Ga0213867_10161504F056585AGGAGMARETWEFWADEYQEYYDDDTPVYPDDLEEWKKEEQKVIDEVIQALQGVTA
Ga0213867_10161505F056586AGGAGGVKQTYQVIMTKVYEVKVEAESREQAEEIFDNFGDWEELLRVHTLDVEPADYLTLREED
Ga0213867_10161507F008883GAGGMNFGHWTIWYNHEQHVWDIYDGNKGYKYPEYTINNYSGLMNKLRDRFGFLDTDKNHRRFWRVMRWWDKLRHGRR
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