NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1020978

Scaffold Ga0213867_1020978


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1020978 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2667
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004722Metagenome426Y
F006109Metagenome381Y
F017824Metagenome238N
F047029Metagenome150N
F051901Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10209782F047029GGAMSEAVGSTPNNPIKLNQYRVTLYPKHGATENIYMEAPDVYTAQMYTRRVYPDHRILAIKPVIDLVEERVL
Ga0213867_10209783F004722GAGMSRTGREMMLEWLYREIRLAKTADLQRAAAFLEWARGIRKGCSKQRGGARVAQANAWRKGVDRDVRW
Ga0213867_10209785F006109N/AMTRYVVMAGDRWVTAIYGPGKGIAVTRVKEDASSWPNYERAVVAARAAADCTNSPVAVHSVDEPAY
Ga0213867_10209786F017824N/AMNNAVLQWKEDSERSQRLGEGRSRTSAEKSELFELMIWIGGQGAMRDLIRAESLQQAIEFAKNRYPNCRVDVPPKAAKRPKLARSHTSPSLVERRRKQAAEGK
Ga0213867_10209787F051901AGGMTPPPKINFTKAAAEMARADYLDELFFKDGRDQLSHPMHGTYTGLYQKYTLKKLG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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