NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1029978

Scaffold Ga0213867_1029978


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1029978 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2167
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048647Metagenome148Y
F049291Metagenome / Metatranscriptome147Y
F067203Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10299782F048647GGAGMTKKLYNVKIDFEVWYDRNFEIEATCKDEARNIAHDIAREQTMHLINADIDVENDGGWTYVDQDYHTVHVELEE
Ga0213867_10299784F049291GAGGMRSNIKKMRIKKVSKKAPEWQRQRLKEQSWRGILNKTFDLSEPDQEAIAIHQGRRYP
Ga0213867_10299787F067203GGAGMTVTWDEIEHYELSEKDQRYMAMYGCTQDDMLCMMNDPMNFIGGHYMLAMSILSDAQECIARGKDETARQYINKAKYVLRQWKEE
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