NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213862_10002139

Scaffold Ga0213862_10002139


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10002139 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8149
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004952Metagenome417Y
F005590Metagenome / Metatranscriptome395N
F005843Metagenome / Metatranscriptome388Y
F009460Metagenome / Metatranscriptome317N
F020173Metagenome225N
F054773Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_1000213913F005843GGAGGMTLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPKPRPTQEAG
Ga0213862_1000213915F009460AGGAGMAKWDLSKLENSASVGAHIDEDSSTPTQPTPQMIIMSIRRKADIMRMDAARKPERRTMKQRAEEIMALCEMLERRL
Ga0213862_1000213917F005590GGAGGMTESLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHNELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQ
Ga0213862_100021396F004952AGGAGMNLTHTHEFLITHITDSGTGFGVRTDNGESVHISPRLLQQAHANLDDICIGIIVQNAVEDQRERTPWVAAYVQERRAARDVLAATYGLDDSERFAKDEDGNTVVVAEVGEPKPKPVDWADVQRKIISMLQSADVSYCETADIADVVGVEPRKLSQHLENMHARGEICKAHVNQRANQQRATLVLWSINADVYK
Ga0213862_100021397F020173GGAMICATCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEEEEE
Ga0213862_100021398F054773AGGAGGMTKQENIISIVSEAVEKAWEGSSSAKEASEKYLAMLQQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLNKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATSEDLEQAIMHETSRSKHHEGQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.