NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10002770

Scaffold Ga0213862_10002770


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10002770 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7192
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (27.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033757Metagenome / Metatranscriptome176Y
F037817Metagenome167Y
F080032Metagenome115Y
F097128Metagenome104N
F104969Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0213862_100027702F104969N/AMKKQKERDILSIEILYDDKEELNELVNSEDFNRLMFEEAIVTIENALNKKRETARMFYIPNLDCSVVLKQSNFKKVLDTAIKFYEQQEEYDRCAELVTLKKKVNGPKKRNKGGA
Ga0213862_1000277024F037817N/AMKMFSTVLIPEVEKGMEYVVTAQIDSVNPEMDSRPGPYYLVQGVKRGTTKKLKKANFKQGKLYNHADVILA
Ga0213862_1000277029F080032N/AMAEKKGQTVKLKYDFPSYLCCEVYIPNLGWWHRITPKEFRSWCGQRRLLKFKGEFGTAERESYYEEYDGPTYLYDSNKKINPSKYIQNKVAFLHEKDPREFVPRNGRERDFIHQVKAE
Ga0213862_100027703F097128N/AMDQKREIKEALEQILGSSIIMRDDGSDPVDELKNDFIKLITLYEEVWKRQNDLLEIQGLDFTSYDENYFRLIEGFIHFCFDGVAADAILFYIYSRQGDNDGTIFPFVDSKNQEHTFKTIDDLWEFLLYWAEEMMRP
Ga0213862_100027706F033757N/AVVYVKKITVDNYDEFLQMALNQKFTMAQDIVETVLENLNTRKKEIPVFEIEVDSEGAIYTLSVQKDEFIKILNTNLIHFENEEAYEGCQKIIEAVNYLKTKNG
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Institute for Fundamental Biomedical Research
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