NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10014115

Scaffold Ga0213862_10014115


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10014115 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3053
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004688Metagenome / Metatranscriptome428Y
F016342Metagenome / Metatranscriptome248Y
F037476Metagenome / Metatranscriptome168Y
F049999Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_100141153F016342N/AMEMKSRDYHALKDEGLLKAVEKKEIIKQSSQGNFGMYDVLPANIARTVSQACDDFFESRNIRYGSAWFHDRLDRKKKIQQARDERNTNS
Ga0213862_100141154F037476N/AMNETPTVKLTGVFPKTFRVTKCETGRADCCFEYTDEKKKVFFEVSLHGAVELHEHFTELGYTELAPKLEFPTWHPNYKKS
Ga0213862_100141157F004688N/AMKTMIEKYTMPCVHMNGSSEDSLRRQYQELFEAVSEAQIKLLYDVDFHQRDYYPLGELVWSEANLEREEIKEAMNKVYQYARQHMHFLDYGKEPLPDEN
Ga0213862_100141158F049999AGGMLGSICTSSTMERSHCQMKIKNYLVIIEEVNRLQFEVEASSEAAAIDLVETGEAGDPNDQREMEFNCLSVKEHVK
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