NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10020611

Scaffold Ga0213862_10020611


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10020611 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2464
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008748Metagenome / Metatranscriptome328Y
F058993Metagenome134N
F083251Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_100206111F058993GGAMENSIKALEVYIKKEIKDARVYFKDNDHFEQVFDEAGWTPESMRVFDCGYVKGFEAVLREIQNKYE
Ga0213862_100206114F008748N/AMTREELKQLWFSLPRVKPVKEIKAIVVTRHGDNHYSCQRQTQTQEYWASSTSNFKTFEEALERANTMLESEIHEGYELVIN
Ga0213862_100206115F083251N/AMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDNLTK
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