NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10001634

Scaffold Ga0194047_10001634


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10001634 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13505
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013252Metagenome273Y
F017424Metagenome / Metatranscriptome241Y
F035623Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000163410F017424N/AMKDILSEIISRTRDEQKKLADTLTAGHNVNTFEDYQRLVGRFEGFKAVLDLIDDILREDDEE
Ga0194047_1000163411F013252AGGAGMAKNPQDGGELGFRKTYKMTGTPGFGGGPGEKTIDKGSSGSKRANNAVLNGNKMAKGSKVGPGKNLKDIDGGNFY
Ga0194047_1000163416F035623N/AMSDYAYQIKGALENAQGQFIGLRVLVCDVNNFEIVDVPAEVLDKEITRFLQFRLKVTEVIDIQRLPIPIQNKIRAPLGRWLDYWVVKNFYGNFGNREGTNT
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