NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10002721

Scaffold Ga0194047_10002721


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10002721 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10032
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F015062Metagenome257Y
F016247Metagenome248Y
F037052Metagenome168Y
F053035Metagenome / Metatranscriptome141Y
F083731Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000272115F083731AGGAMNLRQLLKHAGISNDIIKEVEKKTAKSNAQMEQEHQEKALAMTKMMLNDALRYRKEHGDNSPPSAPKKTIIVPDDM
Ga0194047_1000272116F053035GGAGMNPFELRFSVFNTAKDLMVKQHEANMAAWEVLNKTSKEATDLAPKFPTMEEIIDKAIEINTFVSGQTTKELTGLVKKMSGVSVIF
Ga0194047_1000272118F037052AGGTGGVAAKKPVSKYVFVPAMCDRMIEMGKEGASQKMMFSEIGINKDVAKTWCKNHPEFADALSTAVTHSQAYWEREILANVNNKAFNSRLAEIALRGQFQEDYRETRETKVDVKAEVTIDFNKEIADLISALKS
Ga0194047_1000272120F012096AGGAMSTWLVAAMGLVYLVVSIDQFTKGATGQGIMFLGYAIGNAGILLVVK
Ga0194047_100027218F015062N/AMKTKHKIKATTPRLSDEDPDPLEQDDVEGTSTQFIEGWFPWDTEDMIDIRYLIEYKIPPKQQEVLLAFLNGQSYNDIHVSEKYWRYHFTKGVEFIKQELRV
Ga0194047_100027219F016247AGGAGMSHFIVEHRHKGNYVMESITGVEDLDTSRYENILGIWVCDSFEELQIMEKELKEMRHARSSESS
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