NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10003726

Scaffold Ga0194047_10003726


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10003726 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8445
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002643Metagenome / Metatranscriptome540Y
F031094Metagenome183Y
F059961Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000372610F031094N/ALCKQNQKTMKSVLAYENNFYPYNGQLIPQGGDNVFLDYEIDGSRFFLVKFRTIDLANNQIILSIIKL
Ga0194047_1000372617F059961N/AMIGLKTTKTMNEFPSIDLMIGQLNKSITDIEATTLSKDNYVLQTLRVALRLALDIKKEELNYFKSKTN
Ga0194047_100037262F002643N/AMKYQQLNTLVASINAVIGNLETKIQKKLFKIYEKVKSHHESYQAQVEELRLDNASADEKDILLLDEKGGYKFTKEAIKKLTAQVKELGEKEFAFDKINVVNPTGLETFTFLEDWTTGITFVKEEEEEL
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