NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213858_10000172

Scaffold Ga0213858_10000172


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10000172 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30589
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (27.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024089Metagenome / Metatranscriptome207Y
F025718Metagenome200Y
F029108Metagenome / Metatranscriptome189Y
F029925Metagenome / Metatranscriptome187Y
F042280Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0213858_1000017215F029108N/AMKQININKYLIGKKKLGKGMRGAKGEVAVPTGAFGNGSKYSKRKK
Ga0213858_1000017218F042280N/AMKITNKWDETFEVNIGDWVGFKSDIEQIGRVKQIQSRGALIVENKNGFDGDYIGGDTEALVGFDHVWSES
Ga0213858_1000017222F024089N/AVKGELNIIMNKLEEAIGKMSNIQDNIDTLIHAIGDSPRSYSEDELMNMLIGMSQLHQTWYDNLWVEYENFKRQHNAFDKDDIFDQNYLKTKKQ
Ga0213858_1000017273F029925AGGMYILKSILNQAGAVWQVESIALRRRDAERLLRSRMKNNDGSRRYGLFAVNPRG
Ga0213858_1000017275F025718N/AMIKNNKQVNGFIAKVNIIDRKTGELVSKNVMMKCEHHASVEDLNKDLAKFGLPRKFELVEWIA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.