NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10047561

Scaffold Ga0213858_10047561


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10047561 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2075
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010571Metagenome302Y
F038195Metagenome166Y
F083384Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0213858_100475613F010571GAGGMSMNTRQAIYTETLYEGFYEKHYQELSKTSDDVDWIENESERLALIDLDNFEMEG
Ga0213858_100475615F038195AGGAGGMKLHKDYYEYKTIPFTYFKKVANRHDFKREWVTVKCQEDIMKQKPLNVEVRRLRKNV
Ga0213858_100475618F083384AGGAGGMNKEETNKLTNFVIFRNNKRLEMIKDIYINGNAFSKMTVEQREKEKDKHKIHKDNYVSVNVLSEHMFVREGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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