NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10076148

Scaffold Ga0213858_10076148


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10076148 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1635
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002412Metagenome / Metatranscriptome561Y
F047630Metagenome149Y
F064453Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0213858_100761481F064453AGGAMIYTDQENEWLSKPKKYKKSNTNRQRKVEETEWDCQGGHWFINPSRAWGIKTTIEVDGKEYVVPVQL
Ga0213858_100761483F002412N/AMLQRVLFIYIILTTVAVAFHENTFAVFELREQLQMLYINMWELLHQLEYVTPDQRAVVYEEIDDIRQQIIQTIDLLKQHDQAEHV
Ga0213858_100761484F047630N/AMQYYYVLAYQGSQCFRYYCQLDPESADILHDSLYARYDLVQVCEVAQSEVDPDLVI
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