NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213870_1124741

Scaffold Ga0213870_1124741


Overview

Basic Information
Taxon OID3300021357 Open in IMG/M
Scaffold IDGa0213870_1124741 Open in IMG/M
Source Dataset NameFreshwater microbial communities from subterranean cave lake in Wind Cave National Park, South Dakota, United States - WICALVC2017
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: South Dakota
CoordinatesLat. (o)43.5566Long. (o)-103.4781Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039301Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0213870_11247411F039301N/AKSANKVAQIQGVQVNLQIHSWAGDNGYPGGGVLERGMMLKSRTSGDPHPFVDPATFTQWVKRTQDGAARAVQEARQKAGR
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Institute for Fundamental Biomedical Research
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