Scaffold Ga0213873

Basic Information
Taxon OID	3300021358 Open in IMG/M
Scaffold ID	Ga0213873_10000004 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	774374
Total Scaffold Genes	680 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	420 (61.76%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

774374

Total Scaffold Genes

680 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

420 (61.76%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.2822	Long. (^o)	-43.5936	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brazil: Minas Gerais

Coordinates

Lat. (^o)

-19.2822

Long. (^o)

-43.5936

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001931	Metagenome / Metatranscriptome	615	Y
F006090	Metagenome	382	Y
F013963	Metagenome / Metatranscriptome	267	Y
F038723	Metagenome	165	Y
F057405	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213873_10000004206	F006090	GGCGG	MRAMSLLMQRKAPATLPKLEGKEVLVGPDPSIAKVKGVMFGGRKQFLLDTAGEDGFARLLEKLTPRTRGYVKTPLASSWCEFESLVELDRTIHETLKAQYPNVLALIGAASAELGIGRIYRSLDSEELVHFLENNALFHDQYQKFGSVRFERTPNGGRMIYTNYPVYSPIFCGSAIGYFQESILRHGGTEPNVVETKCHCHGDKSCTFEMTWK
Ga0213873_10000004252	F057405	N/A	MDHREVPSYERETPAEVLRRIKRNALAACAGFAVISWFLGGFRGLLGLTCSAAVTIISFLWLEEIVTTLLQPAAHLHARRLMLRTLARFALLGVALTVTIIIARFTALSVLLGFSVIVVGICGEALYSLYRSFTEE
Ga0213873_10000004281	F001931	N/A	MNEALQQQRTQILSGVVTKLLEDLKGGSGDKDRRRQVEEWMRTLAEKYPEFKIETGLRDYYLAEAERLRTDFDRATDLTEKLALGRSIESFLDRAADYDRRISER
Ga0213873_10000004288	F013963	GAGG	MNYDLAMMALEGLARAPLAVRSENGELVIEAEAASFKELARLCLLLGGTNSTDDEFELSPGVHVEGDSPRVRLRLRAE
Ga0213873_10000004458	F038723	AGGA	MTDRFDHLSRSSSGLHYVRDRKGGVMRVLTDSELADFDDPPPCPQCSEQFGCDHFNCAGEPLLGEQELESNVPAEWLPFAKENGVSRGDVERLRAIELHEGEYRLAAGAQADMRTQELVLLLNEER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213873_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences