Scaffold Ga0213873_10000987

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213873_10000987

Scaffold Ga0213873_10000987

Overview

Basic Information
Taxon OID	3300021358 Open in IMG/M
Scaffold ID	Ga0213873_10000987 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4618
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.2822	Long. (^o)	-43.5936	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213873_100009873	F002324	GGAGG	MGDIKLFQVCYEGELTVAVSDAMRRLGAEPNFDQSWSVWLPEGGHAELLVRYLRIEVGDEARVLIGCSQFTKTRDFLLIRHSLTPGADYSELHDAIARLGVVVDLPFESTFVVQSDDRTDVNTLGMALGELCPDDALFVTGISHDWAYCDGTTSKMYVAEQEPKSIQFRTF

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