NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213873_10019608

Scaffold Ga0213873_10019608


Overview

Basic Information
Taxon OID3300021358 Open in IMG/M
Scaffold IDGa0213873_10019608 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1570
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.2822Long. (o)-43.5936Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003136Metagenome / Metatranscriptome505Y
F032056Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0213873_100196082F032056GGAMSDLLYFEYALVLPEEHYLIEVQTRKPGGEVRGQAEIEGIAKECLALVIGKGHDDQVKDLRPNPISESGAQMLKKVQSLLTRPDSAVYLVE
Ga0213873_100196083F003136AGGAMKTEPQRTCPSCGNELSGAMEFCPVCMLRKGLAGGVESGESSFQE

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