NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213873_10065240

Scaffold Ga0213873_10065240


Overview

Basic Information
Taxon OID3300021358 Open in IMG/M
Scaffold IDGa0213873_10065240 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.2822Long. (o)-43.5936Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022093Metagenome / Metatranscriptome216Y
F034727Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0213873_100652401F034727N/AMTTDEVLDALGRYIRESQESDRQTATRLGMKCPILEDWLSGKSRPQKGALARLAGFLRRT
Ga0213873_100652402F022093GAGMLDEPWLRMSNLMRVEFSRGLRPNSPRFVLVVEIPDSAVAELNAKKISLEKRAYEIASEVRNADHSNKPESQMGLMSCTKAKVKNLEALGEPNLLTHDACRAWVIKRPSPMDEILDKSWHSRPKNPGSSN

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