Scaffold Ga0206689_10202319

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206689_10202319

Scaffold Ga0206689_10202319

Overview

Basic Information
Taxon OID	3300021359 Open in IMG/M
Scaffold ID	Ga0206689_10202319 Open in IMG/M
Source Dataset Name	Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	546
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095565	Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206689_102023191	F095565	N/A	CFAQCQCKKATIAMKACMWLVALCFTVVNGRVLRSASGVAQEPDTSCGQGYDSLVQGSKDYLTTAMVELWNHPGHHTDNATFSREIECWFAAMCTMKCDGLASQAESRKKDLTEKCLATGTSWLEIWKMFSDDEVQFWKKNYPAQPMNAEEEGADVSYKQAMETVKTADKKEMLCLTLFT

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