NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206689_10730044

Scaffold Ga0206689_10730044


Overview

Basic Information
Taxon OID3300021359 Open in IMG/M
Scaffold IDGa0206689_10730044 Open in IMG/M
Source Dataset NameMetatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)903
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003733Metagenome / Metatranscriptome471Y

Sequences

Protein IDFamilyRBSSequence
Ga0206689_107300441F003733AGGAGGMKALRTKICTYAIALFFSISFATPSFAGSSDFSGIWIAAHAELNVVAIDGTNTTPGQGATVAGTGGSDNTETTQGTIGGFAPTAGYEFGFNLPLGPVFFVTLGVSDGGGESAAIAKVKDQNGTSDVSLHASDPTWYYIAPSISIFDNSAVYFKYGQAQVDLKAIGDVAGAPNNIDGDIWGIGTTSIANNGLFFKTEAGAIQYDK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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