NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213872_10035189

Scaffold Ga0213872_10035189


Overview

Basic Information
Taxon OID3300021361 Open in IMG/M
Scaffold IDGa0213872_10035189 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2291
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.2822Long. (o)-43.5936Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035002Metagenome / Metatranscriptome173Y
F066358Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0213872_100351892F066358GAGMRKKWILASLVLALAIMVAAKYGVQLVTRFQNDRQPVNQQITGPATLQPFDERLSLRMPVAFGSPTEFPLGRLPVEARGKVQKMVQRTAYFSGVYIVAMKVTNAPGTKGKIEDSLYNTFSRDANPPSSNMPEISWSYVNGVRESGAVRFPAVFGNTKGQMTAVVIRSETEDALWCVNAWGSGKAADLAEKTAREFALK
Ga0213872_100351894F035002N/AMRLVEFGEALSAGTRLTLFSNDKPDRFSTVIKFWMAETSGVALALKGGVPTY
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