NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213859_10006064

Scaffold Ga0213859_10006064


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10006064 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5391
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024299Metagenome / Metatranscriptome206Y
F089551Metagenome / Metatranscriptome109N
F104071Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0213859_1000606410F104071AGGAGMYDTQLTAQQQNTLRALTHKWNTLCEGDYESTFVGGVAHAYCDSGIMTDGLSAADVAMLSKYFTGETIYSADVGIDELEALVARMENTEWQTDLFKFVDAVNSVLTAEQHKNLDSTEAAMSYCWECCDT
Ga0213859_100060647F089551AGGAGMPYNSKNAKPVYYKQNVTTFVQLINNIIRLQYDSRISGSTAAQYIENMFNSYLQHSQNVQKHITPSVKRKKHPVYE
Ga0213859_100060649F024299AGGAGMQNTAANNTLIKNVTTAGESEVELYIDLAQHNLQVNGRKVESVSMCVTLDEDEHYVGDLAVNWQEENDSDYKHNTALLMRDIHDTNNNTATMGQFYWEHAFDDELHSILQQHGFSKAAAEDVCTSEWGMQDVGRASYDAYDIAEEMLAAHNIKIKTPY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.