NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206123_10002706

Scaffold Ga0206123_10002706


Overview

Basic Information
Taxon OID3300021365 Open in IMG/M
Scaffold IDGa0206123_10002706 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15224
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED273(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010695Metagenome / Metatranscriptome300Y
F011679Metagenome / Metatranscriptome288Y
F030108Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0206123_100027061F030108N/AQGLVSLDNGVFAGAKVMSLNETSDLMTTAMVGYGFNLGGVDINVAYVDRGYQGIDIDGWEEIGVAANFDLFGVYYSKGLDDAGDFYLVDSSALKVVDVAYGDWDNAGSYWEISKSLDLAMGSVKVGYIDHESNDEDFSDKITDVDNFYVGYSYRF
Ga0206123_100027062F010695AGGAGMQNLNTKNQSKDKIVSIPGYTIGSFTCYNANNDDSANIQLTALEEMWYGHEENIDHPEGSEYPVSINVPHMKVMRERVFDSVLNRTGIDIRDFDSIIHASTSPGRDEQGNIIDHGNENLVRNV
Ga0206123_100027063F011679GAGGMIKDRNTTVLATDYQSTEQLKKFIVHCTGAKLTPVANNNDAFWIKGDKRGDYYENKYFKIVFGPVTEEFRAGKPTKSGYGFDIQATGDYRAWDLMGEYRKMISEAMAEYKQKETA
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