NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10001760

Scaffold Ga0213860_10001760


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10001760 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8753
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F024320Metagenome / Metatranscriptome206Y
F030067Metagenome / Metatranscriptome186N
F030293Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
Ga0213860_1000176011F001655AGGAGGVKQPDNDHVKHFGNDGSIGNDAEIIVYYEQHGPAEPVLRIPFWFCKDELGLFENFEASVRRTAKALAESYTYWPDGYVHVQTIINQEYVNIV
Ga0213860_100017602F030293AGGAMIVEMLNDRVSIEALGLIPHFFERSLYIEGQSIQSVADKMDSLYHYGGFVYHLDGTIDDKGVYTSAHDDEDVLDPIAKITKLGFTLWVYPYAIVGLTDTKGNQKIARFD
Ga0213860_100017604F030067GGAGGMPRESWEIAHDEYYDDLEAEDYVGLDDISAWKEEEQKIIDELCKRLEKAYNDVL
Ga0213860_100017607F024320AGGAMTIDEYAMEYGGLDDNSGPAEDPETHAMVEHLVEFDTEMYRLQSRRKYTGLSYGHLERLMIELHGEHWRDAL
Ga0213860_100017609F002858AGGAGMAIDEKSIYLVDGGDYQIYCLGYTQARTVTNDIMKRDPWGGIPFVYEQDQLEVSFDDKGNVVMPRVTLDRILFIASDELPQAEGEQ
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