NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10012282

Scaffold Ga0213860_10012282


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10012282 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3515
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F023856Metagenome / Metatranscriptome208Y
F026889Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0213860_1001228212F026889GGAGMNNVIEEYLALVERTVYHSDLDAFDALEQLEEDYPELADLVYQSAGPLAYDIQNNEVI
Ga0213860_100122822F001655GGAGGLNMKQPENDHTKMFGNDGSIHNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLFENFEASVRRTAKALAESYTYWPDGYVHVQTIINEEYVNIV
Ga0213860_100122823F002858AGGAGGMLIDEKSIYEVTGGDYSVYCFGYTQARTVTNDIMKRDPWGGIPFVIRKDLEVSFDDKGNVVMPRAVLDKILFIASDELPQAETASTEGEG
Ga0213860_100122825F023856GGAGGMRCKACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMQYYQYEIFTDDEKYDTLY
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