NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10079343

Scaffold Ga0213860_10079343


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10079343 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012123Metagenome283Y
F016409Metagenome247Y
F046317Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_100793433F012123AGGMIKRNPCKVRKKTYTENGIEYIERRGYAQERKTIDGEEQVFVMEGGDTGIGYWYPSSDVQLTKGKWTNNTGKVTKKSYR
Ga0213860_100793434F016409AGGMLNANKLGYYLWKRINQDQEKYKKTRPMNMWGLYINRADLDSYIRDYYNYGMDWDDTSKEELWEHRYWDEKDDDI
Ga0213860_100793436F046317N/AMNKEEKIKYFEFLVNSYDKGTAKIRGDHPEEVKIAIDSFFKAAKILVDHPEIETIPKEYVDKLLSSLAQYPQYHKLVMDLVVIINQGEDYEG
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