NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10080227

Scaffold Ga0213860_10080227


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10080227 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1415
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Aequorivita → unclassified Aequorivita → Aequorivita sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012206Metagenome / Metatranscriptome282Y
F032262Metagenome / Metatranscriptome180Y
F034158Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_100802271F034158N/AMREGIGKVIRGASKATEAVANASGNRLRWSTKNTMGGLIVTTACEQIVIHGITWQAIALCFVGILPLALSTLDA
Ga0213860_100802272F032262GAGMNDSSDIIALNLAWFGWELARWQDVIDWTISAAGALTLLAINIIRLRKVWRQHRNVDSDE
Ga0213860_100802273F012206N/AMSEDIFNFLQQSSSAASDYVKFQDGDKKSLRILSKPIMGFELFVDGKPVRWESDAERPEHAISDERPKKFVAFIVYEYEGQSDSGRIKVWSLTQRTIIDQMAMLFREEHWTAFELVVTRVGKGLDTKYNVTGIKSPIEETLLAFAAEAYKYIKLDNLFTGDSPFLEELPALEAKQVKQESKDLPF
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Institute for Fundamental Biomedical Research
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