NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10000176

Scaffold Ga0213863_10000176


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10000176 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49896
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (83.10%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001521Metagenome / Metatranscriptome679Y
F003051Metagenome / Metatranscriptome510Y
F003976Metagenome / Metatranscriptome459Y
F005591Metagenome / Metatranscriptome395Y
F010318Metagenome / Metatranscriptome305Y
F010571Metagenome302Y
F021404Metagenome219Y
F031261Metagenome183Y
F038195Metagenome166Y
F083384Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000017612F001521GAGGMTKLWITEHVNEDGAAIGPYIKAETVAEANRIAIQYGLLVLGEIQELEHEVKIKERVVH
Ga0213863_1000017657F005591GAGGMNLYFKSTTLDKQIGWTWKDMDKAYWDTWIPKKSDIKIITRLNKEQKKQALDELWEDLQGAIQFTRDRNNARRRQKRLAQKEKV
Ga0213863_100001766F083384GGAGGMKEETNKLTNFVIFKDNKRLEMIKDIYINGNAFSKMNVEQREKEKNKHKIHKDNYVSVNVLSEHMFIREGK
Ga0213863_1000017660F003051GAGGMKTKILKSKVVIDMSVSEYDTLFKYIGKLDSMLNTLHETNDLWLSDVHNLSSLKWELIEMLDAEWNPDTYRYVKRGNK
Ga0213863_1000017664F010318AGGAGGMNVDSDKPKYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEEYEGEQGETDWKWSAQENILTKDWYLVEGLN
Ga0213863_1000017665F031261AGGAMTRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAVKWDVYIYQGGR
Ga0213863_1000017668F003976GGAGGMSRLYNDYYFEKQDILDTLDKLEMSVRFLNVWVNEPMGLENARYVLEKNANQEFNWFSRDMVKELLEEELR
Ga0213863_1000017669F010571AGGAGGMSMNTRQAIYIENLYEGFYEKHYKELSKTSDDVERIEQEASRLAEIDLDNFEMEG
Ga0213863_1000017671F038195N/AMVEVIYMRQDSKMKLHKDFYEYKTIPFTYFKKVANKHDFKKEWVSVRCQEDIMKQQPHNVEIRRLKRNV
Ga0213863_100001769F021404AGGGGGMTYKINDKIDYFFKGDEDNEPCEDVMIVKALKDLDNDEVFKLKPTANNNNVLVKGDYDRSTGKYWATKWHDMNNETLKDGNTLVFTGFIF
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