NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10007094

Scaffold Ga0213863_10007094


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10007094 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7235
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046345Metagenome151N
F057323Metagenome136N
F071009Metagenome122N
F071183Metagenome122N
F073484Metagenome120Y
F086945Metagenome110N
F090089Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000709410F090089AGGAGMSVTYYLTDHNGNQIAFFYRVESERYNTVPNILWACRQYPQFQGSASSKGDFIEQAKQTLKEIKKLSVPVRKTCDVCDKSLQGRENEGTTCNDHNFNR
Ga0213863_1000709411F057323N/AMKILVLTIRAHGEEDDIYVFDNREVNVLPAIKEWLKDNDIKITLPDHVTDTYSFMDWFYDAENSLEDCYDFFVSLQYKELLSE
Ga0213863_1000709412F073484N/AMKINQPTDNSLYVTIGNFTYYFDDSIDGEYSVNRWHKDDDDINDPKLLQTTEDE
Ga0213863_1000709416F046345N/AMNIKINVREDSMGCLYLTPVKQSYIDQIIEYLKEFNVDSDGSVLIQSDYEVESFYEDCTYRQRKDIQQGWGANMLFDAWVFLNYIGWDACEGLELK
Ga0213863_1000709417F071183N/AMKTILKEEYKLTNDGDAWGNCMQWLFAICDFLTFETDECIPNEWQFRASPMGANEDCFCYQSLRHFAFEKDITDADVLEFGKVLARLRDILERKGLSY
Ga0213863_100070944F086945N/AMSTKFDINEEITDCPFDWSSIDHRAIADGWYHFWGNTQITSFETDKKGKYVRDEDGKLIAHRTKISRKLPRTWFNKQQEGQEY
Ga0213863_100070947F071009GGAGGMTTDPENLPSLDDASLDALIQHYLSLKQKLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNNQ
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