NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10015796

Scaffold Ga0213863_10015796


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10015796 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4476
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F037256Metagenome168Y
F048285Metagenome148N
F059873Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1001579611F002399AGGCGGMSNETRSKNKSIIGQLRKKYGLKDNTPIHKVEIAMSPKDWKEFSEALTFPNGKPTNRGK
Ga0213863_100157964F048285GGCGGVKIDSIQLEQATAYILETNKYIYEQAEELAKQHLESSDNKNFKARIKRYEPESKETLLHFTDEITAWAECEKNYPLMDFIYKFFQIKKGYYE
Ga0213863_100157965F059873AGGAGGMSIEYIGVKIKATTYGDFPDNVKEITHAEMQFSVPCDESKAKKFEKAKDNLLKSVIDMYALEDQHQVDVTIEYEYFGVNEQ
Ga0213863_100157967F004603AGGAGMIFSININEHIIDWCYTLNNQEKQYYQTWIPKLSDIQIVTKELNGLTVSEVKKLILEDIQPDIQMVRDNTNQKAKARRQKNV
Ga0213863_100157969F037256AGGAGMSNKKEYIFSNTFTVTEETEVLANSYEEAVDIFLSGGGTTDEVDSCGGNWECIQEPIEEEEQKQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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