NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10015862

Scaffold Ga0213863_10015862


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10015862 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4463
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019909Metagenome / Metatranscriptome227Y
F020259Metagenome225N
F024582Metagenome / Metatranscriptome205Y
F036969Metagenome / Metatranscriptome169N
F069998Metagenome123N
F088707Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0213863_100158621F019909N/AMKNFEQHIGHELPQEWIDYINAHTTDELYNQAKKLKFDSWCPILLENDSPELRKHLEEASELLFKYVDYIDSQSVTK
Ga0213863_1001586210F036969N/AMNTMFSTHAIRLAYGRTLMDGGSSLLTSDGYDFEVPYKGFMVGGLSGETKIPLDICDSHTFHSIWLKYAAEVRKLIKESKLSGVSYAVGTWVDDGCIVFDVSEKVTHSRSAYALCKERNEDAYYDVEASKSVFIEKDNDNA
Ga0213863_1001586214F088707N/ANKVGKVKKTKVVNAADGGEAQPFEPRKEVPVVEPKVRKKELMKVTLLEGETPQEAMARLRSAQIEAARLEAEALIADTAPF
Ga0213863_100158622F069998N/AMTKKELIDLMSDYPDDTLVVIEVHDTTLYEDLYDFTFDGVSWTRIFRNGTQTEMHELRLCAINHNEK
Ga0213863_100158623F020259N/AMIQLKMNERTFTAVADWAERIQTMTQENNLINAQDIVHDVFGMLRDDEHFLPRL
Ga0213863_100158625F024582N/AMKCTHNTLTHLLGAWDRLEVVGTNPDNYKSILTNTLLPHRNEFGKRQVKIAIEYRIEEGGARNAPYIYAFLVMYDQNGHRRSVIKNGSWGCHGEDMMEFKLWFAKKLNHANELQEQRIENAQESITDFLS
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