NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10000074

Scaffold Ga0213865_10000074


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10000074 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58858
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)75 (79.79%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F023319Metagenome210N
F023748Metagenome209Y
F064207Metagenome129Y
F068227Metagenome125N
F104047Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000007436F064207GGAGGMQIEKLTDKEKIIVDFLKDNNVDISEVIDVIIKANGFVGVGLVTLEEHIVEAIKKHHKYESLDKIMNG
Ga0213865_1000007443F008925AGGAGMKTTKPTIDAVTLTLINKLKKIDDTINEGAWEYIHLGDIIRLQDAFQEAINHYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDD
Ga0213865_1000007445F023748GGAGMSEYKYTYRFSEQTVDTRYYKVESNKKLTYHEMQDIAWSAEQLEGSSYKDEDGKATFEGTEYGDDAQYQMEEGQEDLVDD
Ga0213865_1000007448F023319AGGAGMSKKIKCHRCKKNEAYPEDMENNASNLLLCDDCYTELRYLMADYLNINIQEINI
Ga0213865_1000007485F104047AGGMNKTDYFNFINTSNYIQNINQGKTGLIQGMYSQKQKIEPLKNVSNNFYADQTKAQSNYMDRRKI
Ga0213865_1000007489F068227GAGMKYLVILLFFITSISFSNQFINRKLTTTYVCADRDFAVNDLENRLALTRTAFSVTSNNSIIELYTNKNKGNWLIMITGIDKITCGLIGGQQEFIFE
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