NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10002061

Scaffold Ga0213865_10002061


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10002061 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12791
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (95.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023578Metagenome209Y
F023756Metagenome / Metatranscriptome209Y
F075986Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000206110F075986GGAGGMNKYTDDQIANACMKCVDDWDMETLLQFAYDEMYHHYREVAESDSLDAFMKDNEDE
Ga0213865_100020613F023756AGGAGMRKTSEFDNDWNDTTIFEKLPVRKTAGKPKRDDWKRDRNAARKAKRMTQEKNYAA
Ga0213865_100020617F023578AGGAGMYWQIGIKIGAESGQVNVHPAALQESVWDNAVEHALDMATALYPQQRIELEWVKEFNND
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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