NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10002918

Scaffold Ga0213865_10002918


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10002918 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10643
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F057340Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000291812F001655GAGGMKQPENDHTKMFGNDGSIHNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLFSSFEESVRRTAKALAESYTYWPEGYVHVQTIINEEYVNIV
Ga0213865_1000291813F002858AGGAGMLIDEKSIYEVTGGDYSIYCFGYTQARTVTNDIMRRDPWGGIPFVIRKDLEVSFDDKGNVVMPRVVLDKILFIASDELPESEG
Ga0213865_100029182F057340AGGAGVKRLLLLLLLSGCVTESDTRICADYGSYTYMKNKCIPLYGALLCADEEVTEVFCKRYFEDEEKEN
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