NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10003914

Scaffold Ga0213865_10003914


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10003914 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9041
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002733Metagenome / Metatranscriptome534Y
F003073Metagenome / Metatranscriptome509Y
F016757Metagenome / Metatranscriptome245Y
F029289Metagenome / Metatranscriptome189N
F029934Metagenome187N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100039141F029289GGAGMTSAITPRYPNAASDPRLTNTADKWRTLNRQIHDKEWNGEPVTNAERDKLATLKQALNDDKHYTPNF
Ga0213865_1000391410F003073GGAGMAKKLENMTPDERIAYFAALREKDRIQRRNRIAKLSLDQRVAVIKVYELLDEILETALYPDMGGIKAVTAHDLQELSDAKDRLRHEFNFDVRENG
Ga0213865_100039143F002733GGAGMTVKTDKLWIQLTRNEANALMVMLDSEMETRFRYEGLDLKEWETLDLEAYKILAYHRFKTRYMEHFDG
Ga0213865_100039145F029934AGGAGMTTITKTCLACNGGGIAEYDKPVTDFANGGWITSTYGKCDVCDGEGDLHVLSEFTSLDILAFLNESAKILEDSDIVDSTLDDVYGHVKEAKDKIAEYIKFHGYDGD
Ga0213865_100039146F016757AGGAMAERTWEVKVEATTTREVIVHANTEYEAQIKAQIDMVGLVGGENTKVLRVQEITDDNDN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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