NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10010695

Scaffold Ga0213865_10010695


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10010695 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5289
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015477Metagenome / Metatranscriptome254Y
F017488Metagenome / Metatranscriptome240Y
F030452Metagenome / Metatranscriptome185Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100106952F017488GAGGMAFITNSSGNVISFAENTDLRQKDQKFFESNNIKIPAESGFSTIEEYFEDLCEKATDRILLKLKASTWWQSYNAYVGTPISNLNALPNVDPNRIDPGNTLGRRQQFTDMCVYYTFSQFLFPLVADFGNPESEEVSKINYYDAKYNDLFNELISIADWYDADNDGTVEDSEKAVSYMRTRRSRSRRSVVPIR
Ga0213865_100106953F052627AGGMAIRDDLITQITTNIAAHSNVSISQELPFDQSGIPLYDKNMGVIYVDEQELNVEQLYRTLDQGNVNQTTTTVNAYLSVDAKNEYSDINTVVANLLIARNVVTNVTESNSDYETEITDDVITYTFEYNFITV
Ga0213865_100106954F030452AGGAGMAVINVTGGDVAILSLGNSSTLAEPDNAAVFQIPLLQDVSVSTAPGTVRYSTLDSTSSSAFTTVVENEITFNMLLDDDAFFGNAGVTDNEVATNGLWSTSNSKTEVFFSISFEGDTTASGGYYLEGKGFIGGLAPSASIDGAVWLSPGSIIVNGDLTKQTL
Ga0213865_100106956F015477AGGAGMEMEIAKAQNEIRCAKADVEKASNRMAFVSSAILHLNNRDIKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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