NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10011126

Scaffold Ga0213865_10011126


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10011126 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5184
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034541Metagenome / Metatranscriptome174N
F042349Metagenome / Metatranscriptome158N
F062840Metagenome / Metatranscriptome130N
F071648Metagenome / Metatranscriptome122N
F077787Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1001112611F077787GGAGGMADKLKQFSVVLSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0213865_1001112616F062840N/AMYNKFKEGLIGNNAYLNWKAYMKKVASAYAYRRVDNTMDDKANLKDMDKHRQLD
Ga0213865_1001112618F071648AGGTGGMKKSFKCTVCDKKFVHRKPDTLVGSLGIIPINLCNTHFKKIMTKEVLPLNDTRKEVA
Ga0213865_100111264F034541AGGAGGMKTVESMTWDELQSALTEYQVNGNGGGMGVKDIQIKHSIEDEVAWRLEKGYTDLTPREIEIELLEQGKIEQRYL
Ga0213865_100111266F042349AGGAGGMMEFEIGDKVKVIGSSTVGEVIDIDYGENIVTISDSYAETNNSELQYKADELQLLTVDHDEDMDSLDEMRDMEMRDNGYRWDDWN
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