NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10015483

Scaffold Ga0213865_10015483


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10015483 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4337
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002221Metagenome581Y
F006845Metagenome / Metatranscriptome363Y
F008346Metagenome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100154831F006845N/AQMDLNSYLFEEDFEEFCRLSYNKIQTACEFLGIINDEDYEGFKERCYSQLETDYINSIENLTIH
Ga0213865_100154834F002221AGGMKSYLDETLESKLKELRNYENDTYIRWGSRRRIFKMVGVQFEIKFCKAEMLLKQTMQIGHPRKKMQMVEMMIRAFDSLNKKCEESGYTRIQPNTRCFNFDQKTALICDTDDEKPVLMQIHKNEKDMIIFSIEELLRCIPKDFMKAKQILSKLDKSVNFERIDYV
Ga0213865_100154836F008346N/AMPIKLKPSSKIRDKATGKFVTEHYYLKSMTIQKLNDYIESSSAKKKIIQKCKNEIVRRNV
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