NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10026966

Scaffold Ga0213865_10026966


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10026966 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3235
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030436Metagenome185N
F038672Metagenome165N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100269662F056150N/ALNNKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGQDFIIQLDSENSIKKYVYKLCIFQIISERGRYKTKYYIPSHFSSLEDIETYSNSCFKDEVLNELINSLDGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKLNWSLNEFYT
Ga0213865_100269664F030436N/AMKSTLNRIAQLIEEYNSTDIFDGNKLNQQLKELTSRLYHIETMRTKAHEDYEKVIHTKVAEGFSVARATNEAKVEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY
Ga0213865_100269667F038672N/AMNELDVILRKNKLDIMIIKASHQLEKKKDKVKQEGLEVLLDILELIHELQDEVRQQRKQIAKLKYENAVAYKENAILKTDFDKYKFNLKKAELDSPNLKK
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