NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10029356

Scaffold Ga0213865_10029356


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10029356 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3086
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038195Metagenome166Y
F047975Metagenome / Metatranscriptome149Y
F051564Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100293561F051564GGAGGMSIPKQMIREWCETYEEAIETLDYLANRSVGTAKEEIKESLEDFFIDNGLMSEEEFKQEVENE
Ga0213865_100293563F047975AGGAGGMSMTKEEWAENTVDDMDWKDLYRIAYDVMLDSVKDMSDKEFQEYLIEQGYGED
Ga0213865_100293564F038195AGGAGGMKLHKDFYEYKTITFSFFKKVANKNEFKREWVTVRCQEDIMKQKPLNVEVRRLKKNV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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