NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10033240

Scaffold Ga0213865_10033240


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10033240 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2891
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020186Metagenome / Metatranscriptome225N
F048697Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100332403F048697AGGAMADFQDLRVQRNLFGNSRSPFNGWVYESNYKMFVCDPDSVPDSRAKFDSVGHRMMNAINPNWVVLRSHTGQIMILVDGNRWDSASIKQTMDEQVYQATLGDTAWTVTESTGAWTYNALDGVTHGTDGGFLVIDINYSYWRSAIVGSVVYDANTENELNETITFDITNANPNTFTGGLNANELAIWNAWQSWPHGEWNLGNYDTGRYNEFPLDVPVSFNNVRMFEVTVDAMDDWITDNYGTDAGEENDMDGASDSQLWRAGSPLSSVLGALNPICWTFRLKGDESDAVDQKSNNLVFMTDNSTSMEDVWQKLESSIKSSSNNNGPDPKLVINPYWGVRPA
Ga0213865_100332404F020186GGAGMAILSNINPNRPQRGKRSVRLSGEASPQEIPLYAGTVVLIANGSGTTFTLANGQEGQMMTFVASSDGAGNINDIRVNCRARYAFDSSGVRITGTSSTAEWAPFNATQEHSMAWAVFTDGEWCWSQGTNEE
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Institute for Fundamental Biomedical Research
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