NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10075205

Scaffold Ga0213865_10075205


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10075205 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1834
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100752052F008883GAGGMNFGHWTIWYNHEDHVWDIYDGRKGFKYPEYTINNYSRLVCGLRDKLGFLDTDKNHRRFWRVMRWWDKLRHGRR
Ga0213865_100752057F024320GGAGMTFEEYEQGYYSGDSEENSGPPEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYRHLERLMIELHGEEWRDAL
Ga0213865_100752058F023856GGAGGMRCRACDRILEESELTKKDAHGDFLDLCNICLSATARSGVDTETMQYYQYEIFTEDEDYDTLY
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Institute for Fundamental Biomedical Research
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