NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10075713

Scaffold Ga0213865_10075713


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10075713 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1827
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F047975Metagenome / Metatranscriptome149Y
F051564Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100757132F003976AGGAGGMSRVYNDYYFEKLDILDTLEKLEISVRLLNVWVNEPMGLENARYILEKNANQEFKWFSRDMVKELVEEETYES
Ga0213865_100757133F051564AGGAGGMSIPKQMIREWCETYEEAIETLDYLANRSVGTAKEEIKESLEDFFIDNGLMSEEEFKQEVDNE
Ga0213865_100757136F047975AGGAGGMSMTKEEWAENTADGMDWKDLYRIAYDVMLDSVKDMSDKEFQEYLIECGYGED
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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