NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10140673

Scaffold Ga0213865_10140673


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10140673 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1246
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F024320Metagenome / Metatranscriptome206Y
F030067Metagenome / Metatranscriptome186N
F030293Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_101406731F030293N/AMIVEMLDDRVSIEALGLIPHFFERSLYIEGQSIQSVANKMDSLYHYGGFVYPFEGTIVDNKGRYLADNDEDGPLDPIAKITKLGFTLWVYPYSIVGLTDDKGNQKIARFD
Ga0213865_101406732F030067GGAGMPRESWEIAHDEYYDDLEADDYVGLDDISAWKEEEQKVIDELCKRMEKAYDDNR
Ga0213865_101406733F024320GGAGMTIDEYAVECGGLEDNSGPTVDPLEHAMVEHLVEFDTEMYRLQSRRKYKGLSYKHLEMLIVELHGEHWRDAL
Ga0213865_101406735F002858AGGAGMLIDEKSIYEVTGGDYSVYCFGYTQARTVTNDIMRRDPWGGIPFVIRKDLEVSFDDKGNVVMPRVVLDK
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