NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10202716

Scaffold Ga0213865_10202716


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10202716 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)980
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Veravirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006728Metagenome / Metatranscriptome366Y
F008731Metagenome / Metatranscriptome329Y
F037990Metagenome167N
F080523Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_102027161F080523N/ARTMQKVPNIGKKLRAELQEAYRRAGKKHGMTAYEMQAATWVAWKRIHNV
Ga0213865_102027162F008731AGGAMFYCIATKPLNDRTNGFRFNMLGIKGLTRKRKHASRGFKIDSGNCMTAIHLGKRTIYIERKPNRTSERRVRHFAG
Ga0213865_102027163F006728AGGMAKLDFNNIVVRHNGRTISIAQHWSRTSEGDFVNVQEIADIDELYHDDYDPIRFDDTVDGLINALQAIKKEIEQ
Ga0213865_102027164F037990AGGAGMKFDKPTARKIRDAMQEALDQAGIKDVTIKVGNCSYSSGEATYKVQVLLDGAKSKEEQDLEQMAYLMGLDTSKIATLQGMRVSLVSYNSRARKRPWVVQDLTT
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