NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213881_10207218

Scaffold Ga0213881_10207218


Overview

Basic Information
Taxon OID3300021374 Open in IMG/M
Scaffold IDGa0213881_10207218 Open in IMG/M
Source Dataset NameBarbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)867
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.28Long. (o)-43.5919Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003842Metagenome / Metatranscriptome466Y
F042049Metagenome / Metatranscriptome159N

Sequences

Protein IDFamilyRBSSequence
Ga0213881_102072181F042049GGAVRKYNKVFGALPTPEPEAQLGFGDDLIEAFYKLTPDERQIVLDIVERLKPGVTSFDFDDFDLQSAAMKLLTYHRLVLHNEDKQNSVLYARWLSSITVVDKKMMLHIDPGLHPHLERLRHHQEADSER
Ga0213881_102072182F003842N/AMVSAKESRQAAGTETSKWSFSADGKPLSLDEFLEGYRKQGTFFEGKEQWLKGVNRVTWENFFLVCTEELDDISQRAAKMLIQYCLEIVEDVASRIRGPVAAAKLADAMKREFDEQYDNPIYQFQWAMRHDAVREAVTNA
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